Perturbseq analysis package

Welcome!

API

You can import perturbseq as:

import perturbseq as perturb

Note

Testnote

Preprocessing: pp

pp.subsample_cells(adata, num_cells, …)

pp.cells_per_perturbation(adata_here[, …])

Counts the number of cells for each perturbation.

Tools: tl

tl.moi(adata_here[, pref, level, gridsize, maxk])

API

Preprocessing: pp

Cells per perturbation, etc.

Tools: tl

Tools

Plotting: pl

Plotting things.

Indices and tables